Get the list of validated packages from GitHub

This function downloads issues from github and extracts relevant information from them

Usage

get_valid_pkgs(approved_only = TRUE)

Arguments

approved_only

only return approved packages (logical)

Value

dataframe including package, version, etc.

Examples

# only approved packages
get_valid_pkgs()
#> Warning: NAs introduced by coercion
#> [[1]]
#> [[1]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/85"
#> 
#> [[1]]$repository_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation"
#> 
#> [[1]]$labels_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/85/labels{/name}"
#> 
#> [[1]]$comments_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/85/comments"
#> 
#> [[1]]$events_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/85/events"
#> 
#> [[1]]$html_url
#> [1] "https://github.com/SwissClinicalTrialOrganisation/pkg_validation/issues/85"
#> 
#> [[1]]$id
#> [1] 2503027683
#> 
#> [[1]]$node_id
#> [1] "I_kwDOKHVskc6VMSvj"
#> 
#> [[1]]$number
#> [1] 85
#> 
#> [[1]]$title
#> [1] "[Package validation]: patchwork version 1.2.0"
#> 
#> [[1]]$user
#> [[1]]$user$login
#> [1] "coslovskym"
#> 
#> [[1]]$user$id
#> [1] 40819212
#> 
#> [[1]]$user$node_id
#> [1] "MDQ6VXNlcjQwODE5MjEy"
#> 
#> [[1]]$user$avatar_url
#> [1] "https://avatars.githubusercontent.com/u/40819212?v=4"
#> 
#> [[1]]$user$gravatar_id
#> [1] ""
#> 
#> [[1]]$user$url
#> [1] "https://api.github.com/users/coslovskym"
#> 
#> [[1]]$user$html_url
#> [1] "https://github.com/coslovskym"
#> 
#> [[1]]$user$followers_url
#> [1] "https://api.github.com/users/coslovskym/followers"
#> 
#> [[1]]$user$following_url
#> [1] "https://api.github.com/users/coslovskym/following{/other_user}"
#> 
#> [[1]]$user$gists_url
#> [1] "https://api.github.com/users/coslovskym/gists{/gist_id}"
#> 
#> [[1]]$user$starred_url
#> [1] "https://api.github.com/users/coslovskym/starred{/owner}{/repo}"
#> 
#> [[1]]$user$subscriptions_url
#> [1] "https://api.github.com/users/coslovskym/subscriptions"
#> 
#> [[1]]$user$organizations_url
#> [1] "https://api.github.com/users/coslovskym/orgs"
#> 
#> [[1]]$user$repos_url
#> [1] "https://api.github.com/users/coslovskym/repos"
#> 
#> [[1]]$user$events_url
#> [1] "https://api.github.com/users/coslovskym/events{/privacy}"
#> 
#> [[1]]$user$received_events_url
#> [1] "https://api.github.com/users/coslovskym/received_events"
#> 
#> [[1]]$user$type
#> [1] "User"
#> 
#> [[1]]$user$site_admin
#> [1] FALSE
#> 
#> 
#> [[1]]$labels
#> [[1]]$labels[[1]]
#> [[1]]$labels[[1]]$id
#> [1] 5847585136
#> 
#> [[1]]$labels[[1]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsRcA"
#> 
#> [[1]]$labels[[1]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/labels/package"
#> 
#> [[1]]$labels[[1]]$name
#> [1] "package"
#> 
#> [[1]]$labels[[1]]$color
#> [1] "3A0FE0"
#> 
#> [[1]]$labels[[1]]$default
#> [1] FALSE
#> 
#> [[1]]$labels[[1]]$description
#> [1] ""
#> 
#> 
#> [[1]]$labels[[2]]
#> [[1]]$labels[[2]]$id
#> [1] 5847585907
#> 
#> [[1]]$labels[[2]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsUcw"
#> 
#> [[1]]$labels[[2]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/labels/:sparkles:%20approved%20:sparkles:"
#> 
#> [[1]]$labels[[2]]$name
#> [1] ":sparkles: approved :sparkles:"
#> 
#> [[1]]$labels[[2]]$color
#> [1] "befc03"
#> 
#> [[1]]$labels[[2]]$default
#> [1] FALSE
#> 
#> [[1]]$labels[[2]]$description
#> [1] ""
#> 
#> 
#> [[1]]$labels[[3]]
#> [[1]]$labels[[3]]$id
#> [1] 6781639450
#> 
#> [[1]]$labels[[3]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABlDebGg"
#> 
#> [[1]]$labels[[3]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/labels/Low%20risk"
#> 
#> [[1]]$labels[[3]]$name
#> [1] "Low risk"
#> 
#> [[1]]$labels[[3]]$color
#> [1] "0e8a16"
#> 
#> [[1]]$labels[[3]]$default
#> [1] FALSE
#> 
#> [[1]]$labels[[3]]$description
#> [1] "This package is low risk"
#> 
#> 
#> 
#> [[1]]$state
#> [1] "closed"
#> 
#> [[1]]$locked
#> [1] FALSE
#> 
#> [[1]]$assignee
#> NULL
#> 
#> [[1]]$assignees
#> list()
#> 
#> [[1]]$milestone
#> NULL
#> 
#> [[1]]$comments
#> [1] 2
#> 
#> [[1]]$created_at
#> [1] "2024-09-03T14:25:08Z"
#> 
#> [[1]]$updated_at
#> [1] "2024-09-03T14:27:01Z"
#> 
#> [[1]]$closed_at
#> [1] "2024-09-03T14:26:13Z"
#> 
#> [[1]]$author_association
#> [1] "NONE"
#> 
#> [[1]]$active_lock_reason
#> NULL
#> 
#> [[1]]$body
#> [1] "### Name\n\nMichael Coslovsky\n\n### What is your relationship with the SCTO?\n\nSCTO Stats and Methodology platform\n\n### Name of the package you have validated\n\npatchwork\n\n### Version number of the package evaluated\n\n1.2.0\n\n### Date of release of the evaluated version of the package\n\n2024-01-08\n\n### The package author has...\n\nWell-known or known credentials\n\n### Is there a maintainer listed for the package and are their contact details available?\n\nAvailable\n\n### Package purpose\n\nNon-statistical\n\n### Number of dependencies\n\n9\n\n### Is the package available from CRAN or bioconductor?\n\nYes\n\n### If not CRAN or bioconductor, where is the package available?\n\n_No response_\n\n### Is source code available, accessible and documented (i.e., well-structured and including comments) or is the source code unavailable or not clearly commented.\n\nYes\n\n### Number of downloads in the last 12 months\n\n2133411\n\n### Bug reporting address is available (in DESCRIPTION)\n\nYes\n\n### Does the package have one or more vignettes?\n\nYes\n\n### Does the package have unit and/or function tests performed by the authors? Are they comprehensive? Are they well documented?\n\nYes, comprehensive"
#> 
#> [[1]]$reactions
#> [[1]]$reactions$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/85/reactions"
#> 
#> [[1]]$reactions$total_count
#> [1] 0
#> 
#> [[1]]$reactions$`+1`
#> [1] 0
#> 
#> [[1]]$reactions$`-1`
#> [1] 0
#> 
#> [[1]]$reactions$laugh
#> [1] 0
#> 
#> [[1]]$reactions$hooray
#> [1] 0
#> 
#> [[1]]$reactions$confused
#> [1] 0
#> 
#> [[1]]$reactions$heart
#> [1] 0
#> 
#> [[1]]$reactions$rocket
#> [1] 0
#> 
#> [[1]]$reactions$eyes
#> [1] 0
#> 
#> 
#> [[1]]$timeline_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/85/timeline"
#> 
#> [[1]]$performed_via_github_app
#> NULL
#> 
#> [[1]]$state_reason
#> [1] "completed"
#> 
#> 
#> [[2]]
#> [[2]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/83"
#> 
#> [[2]]$repository_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation"
#> 
#> [[2]]$labels_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/83/labels{/name}"
#> 
#> [[2]]$comments_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/83/comments"
#> 
#> [[2]]$events_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/83/events"
#> 
#> [[2]]$html_url
#> [1] "https://github.com/SwissClinicalTrialOrganisation/pkg_validation/issues/83"
#> 
#> [[2]]$id
#> [1] 2455348540
#> 
#> [[2]]$node_id
#> [1] "I_kwDOKHVskc6SWaU8"
#> 
#> [[2]]$number
#> [1] 83
#> 
#> [[2]]$title
#> [1] "[Package validation] survSAKK version 1.2.0"
#> 
#> [[2]]$user
#> [[2]]$user$login
#> [1] "SAKK-vsomas"
#> 
#> [[2]]$user$id
#> [1] 151931296
#> 
#> [[2]]$user$node_id
#> [1] "U_kgDOCQ5JoA"
#> 
#> [[2]]$user$avatar_url
#> [1] "https://avatars.githubusercontent.com/u/151931296?v=4"
#> 
#> [[2]]$user$gravatar_id
#> [1] ""
#> 
#> [[2]]$user$url
#> [1] "https://api.github.com/users/SAKK-vsomas"
#> 
#> [[2]]$user$html_url
#> [1] "https://github.com/SAKK-vsomas"
#> 
#> [[2]]$user$followers_url
#> [1] "https://api.github.com/users/SAKK-vsomas/followers"
#> 
#> [[2]]$user$following_url
#> [1] "https://api.github.com/users/SAKK-vsomas/following{/other_user}"
#> 
#> [[2]]$user$gists_url
#> [1] "https://api.github.com/users/SAKK-vsomas/gists{/gist_id}"
#> 
#> [[2]]$user$starred_url
#> [1] "https://api.github.com/users/SAKK-vsomas/starred{/owner}{/repo}"
#> 
#> [[2]]$user$subscriptions_url
#> [1] "https://api.github.com/users/SAKK-vsomas/subscriptions"
#> 
#> [[2]]$user$organizations_url
#> [1] "https://api.github.com/users/SAKK-vsomas/orgs"
#> 
#> [[2]]$user$repos_url
#> [1] "https://api.github.com/users/SAKK-vsomas/repos"
#> 
#> [[2]]$user$events_url
#> [1] "https://api.github.com/users/SAKK-vsomas/events{/privacy}"
#> 
#> [[2]]$user$received_events_url
#> [1] "https://api.github.com/users/SAKK-vsomas/received_events"
#> 
#> [[2]]$user$type
#> [1] "User"
#> 
#> [[2]]$user$site_admin
#> [1] FALSE
#> 
#> 
#> [[2]]$labels
#> [[2]]$labels[[1]]
#> [[2]]$labels[[1]]$id
#> [1] 5847585136
#> 
#> [[2]]$labels[[1]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsRcA"
#> 
#> [[2]]$labels[[1]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/labels/package"
#> 
#> [[2]]$labels[[1]]$name
#> [1] "package"
#> 
#> [[2]]$labels[[1]]$color
#> [1] "3A0FE0"
#> 
#> [[2]]$labels[[1]]$default
#> [1] FALSE
#> 
#> [[2]]$labels[[1]]$description
#> [1] ""
#> 
#> 
#> [[2]]$labels[[2]]
#> [[2]]$labels[[2]]$id
#> [1] 5847585907
#> 
#> [[2]]$labels[[2]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsUcw"
#> 
#> [[2]]$labels[[2]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/labels/:sparkles:%20approved%20:sparkles:"
#> 
#> [[2]]$labels[[2]]$name
#> [1] ":sparkles: approved :sparkles:"
#> 
#> [[2]]$labels[[2]]$color
#> [1] "befc03"
#> 
#> [[2]]$labels[[2]]$default
#> [1] FALSE
#> 
#> [[2]]$labels[[2]]$description
#> [1] ""
#> 
#> 
#> [[2]]$labels[[3]]
#> [[2]]$labels[[3]]$id
#> [1] 6781642354
#> 
#> [[2]]$labels[[3]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABlDemcg"
#> 
#> [[2]]$labels[[3]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/labels/Medium%20risk"
#> 
#> [[2]]$labels[[3]]$name
#> [1] "Medium risk"
#> 
#> [[2]]$labels[[3]]$color
#> [1] "FBCA04"
#> 
#> [[2]]$labels[[3]]$default
#> [1] FALSE
#> 
#> [[2]]$labels[[3]]$description
#> [1] "This package is medium risk"
#> 
#> 
#> 
#> [[2]]$state
#> [1] "closed"
#> 
#> [[2]]$locked
#> [1] FALSE
#> 
#> [[2]]$assignee
#> NULL
#> 
#> [[2]]$assignees
#> list()
#> 
#> [[2]]$milestone
#> NULL
#> 
#> [[2]]$comments
#> [1] 3
#> 
#> [[2]]$created_at
#> [1] "2024-08-08T09:42:03Z"
#> 
#> [[2]]$updated_at
#> [1] "2024-08-08T10:27:04Z"
#> 
#> [[2]]$closed_at
#> [1] "2024-08-08T10:18:37Z"
#> 
#> [[2]]$author_association
#> [1] "NONE"
#> 
#> [[2]]$active_lock_reason
#> NULL
#> 
#> [[2]]$body
#> [1] "### Name\r\n\r\nVithersan Somasundaram \r\n\r\n### What is your relationship with the SCTO?\r\n\r\nSCTO Stats and Methodology platform\r\n\r\n### Name of the package you have validated\r\n\r\nsurvSAKK\r\n\r\n### Version number of the package evaluated\r\n\r\n1.2.0\r\n\r\n### Date of release of the evaluated version of the package\r\n\r\n2023-06-20\r\n\r\n### The package author has...\r\n\r\nNo clear credentials or group association\r\n\r\n### Is there a maintainer listed for the package and are their contact details available?\r\n\r\nAvailable\r\n\r\n### Package purpose\r\n\r\nNon-statistical\r\n\r\n### Number of dependencies\r\n\r\n3\r\n\r\n### Is the package available from CRAN or bioconductor?\r\n\r\nNo\r\n\r\n### If not CRAN or bioconductor, where is the package available?\r\n\r\nhttps://github.com/SAKK-Statistics/survSAKK\r\n\r\n### Is source code available, accessible and documented (i.e., well-structured and including comments) or is the source code unavailable or not clearly commented.\r\n\r\nYes\r\n\r\n### Number of downloads in the last 12 months\r\n\r\n_No response_\r\n\r\n### Bug reporting address is available (in DESCRIPTION)\r\n\r\nYes\r\n\r\n### Does the package have one or more vignettes?\r\n\r\nYes\r\n\r\n### Does the package have unit and/or function tests performed by the authors? Are they comprehensive? Are they well documented?\r\n\r\nYes, comprehensive"
#> 
#> [[2]]$reactions
#> [[2]]$reactions$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/83/reactions"
#> 
#> [[2]]$reactions$total_count
#> [1] 0
#> 
#> [[2]]$reactions$`+1`
#> [1] 0
#> 
#> [[2]]$reactions$`-1`
#> [1] 0
#> 
#> [[2]]$reactions$laugh
#> [1] 0
#> 
#> [[2]]$reactions$hooray
#> [1] 0
#> 
#> [[2]]$reactions$confused
#> [1] 0
#> 
#> [[2]]$reactions$heart
#> [1] 0
#> 
#> [[2]]$reactions$rocket
#> [1] 0
#> 
#> [[2]]$reactions$eyes
#> [1] 0
#> 
#> 
#> [[2]]$timeline_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/83/timeline"
#> 
#> [[2]]$performed_via_github_app
#> NULL
#> 
#> [[2]]$state_reason
#> [1] "completed"
#> 
#> 
#> [[3]]
#> [[3]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/77"
#> 
#> [[3]]$repository_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation"
#> 
#> [[3]]$labels_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/77/labels{/name}"
#> 
#> [[3]]$comments_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/77/comments"
#> 
#> [[3]]$events_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/issues/77/events"
#> 
#> [[3]]$html_url
#> [1] "https://github.com/SwissClinicalTrialOrganisation/pkg_validation/issues/77"
#> 
#> [[3]]$id
#> [1] 2377507733
#> 
#> [[3]]$node_id
#> [1] "I_kwDOKHVskc6NteOV"
#> 
#> [[3]]$number
#> [1] 77
#> 
#> [[3]]$title
#> [1] "[Package validation]: haven version 2.5.4"
#> 
#> [[3]]$user
#> [[3]]$user$login
#> [1] "elio4sakk"
#> 
#> [[3]]$user$id
#> [1] 151913878
#> 
#> [[3]]$user$node_id
#> [1] "U_kgDOCQ4Flg"
#> 
#> [[3]]$user$avatar_url
#> [1] "https://avatars.githubusercontent.com/u/151913878?v=4"
#> 
#> [[3]]$user$gravatar_id
#> [1] ""
#> 
#> [[3]]$user$url
#> [1] "https://api.github.com/users/elio4sakk"
#> 
#> [[3]]$user$html_url
#> [1] "https://github.com/elio4sakk"
#> 
#> [[3]]$user$followers_url
#> [1] "https://api.github.com/users/elio4sakk/followers"
#> 
#> [[3]]$user$following_url
#> [1] "https://api.github.com/users/elio4sakk/following{/other_user}"
#> 
#> [[3]]$user$gists_url
#> [1] "https://api.github.com/users/elio4sakk/gists{/gist_id}"
#> 
#> [[3]]$user$starred_url
#> [1] "https://api.github.com/users/elio4sakk/starred{/owner}{/repo}"
#> 
#> [[3]]$user$subscriptions_url
#> [1] "https://api.github.com/users/elio4sakk/subscriptions"
#> 
#> [[3]]$user$organizations_url
#> [1] "https://api.github.com/users/elio4sakk/orgs"
#> 
#> [[3]]$user$repos_url
#> [1] "https://api.github.com/users/elio4sakk/repos"
#> 
#> [[3]]$user$events_url
#> [1] "https://api.github.com/users/elio4sakk/events{/privacy}"
#> 
#> [[3]]$user$received_events_url
#> [1] "https://api.github.com/users/elio4sakk/received_events"
#> 
#> [[3]]$user$type
#> [1] "User"
#> 
#> [[3]]$user$site_admin
#> [1] FALSE
#> 
#> 
#> [[3]]$labels
#> [[3]]$labels[[1]]
#> [[3]]$labels[[1]]$id
#> [1] 5847585136
#> 
#> [[3]]$labels[[1]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsRcA"
#> 
#> [[3]]$labels[[1]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/labels/package"
#> 
#> [[3]]$labels[[1]]$name
#> [1] "package"
#> 
#> [[3]]$labels[[1]]$color
#> [1] "3A0FE0"
#> 
#> [[3]]$labels[[1]]$default
#> [1] FALSE
#> 
#> [[3]]$labels[[1]]$description
#> [1] ""
#> 
#> 
#> [[3]]$labels[[2]]
#> [[3]]$labels[[2]]$id
#> [1] 5847585907
#> 
#> [[3]]$labels[[2]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsUcw"
#> 
#> [[3]]$labels[[2]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/labels/:sparkles:%20approved%20:sparkles:"
#> 
#> [[3]]$labels[[2]]$name
#> [1] ":sparkles: approved :sparkles:"
#> 
#> [[3]]$labels[[2]]$color
#> [1] "befc03"
#> 
#> [[3]]$labels[[2]]$default
#> [1] FALSE
#> 
#> [[3]]$labels[[2]]$description
#> [1] ""
#> 
#> 
#> [[3]]$labels[[3]]
#> [[3]]$labels[[3]]$id
#> [1] 6781639450
#> 
#> [[3]]$labels[[3]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABlDebGg"
#> 
#> [[3]]$labels[[3]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/pkg_validation/labels/Low%20risk"
#> 
#> [[3]]$labels[[3]]$name
#> [1] "Low risk"
#> 
#> [[3]]$labels[[3]]$color
#> [1] "0e8a16"
#> 
#> [[3]]$labels[[3]]$default
#> [1] FALSE
#> 
#> [[3]]$labels[[3]]$description
#> [1] "This package is low risk"
#> 
#> 
#> 
#> [[3]]$state
#> [1] "closed"
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