Get the list of validated packages from GitHub

This function downloads issues from github and extracts relevant information from them

Usage

get_valid_pkgs(approved_only = TRUE)

Arguments

approved_only

only return approved packages (logical)

Value

dataframe including package, version, etc.

Examples

# only approved packages
get_valid_pkgs()
#> Warning: NAs introduced by coercion
#> [[1]]
#> [[1]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/141"
#> 
#> [[1]]$repository_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform"
#> 
#> [[1]]$labels_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/141/labels{/name}"
#> 
#> [[1]]$comments_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/141/comments"
#> 
#> [[1]]$events_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/141/events"
#> 
#> [[1]]$html_url
#> [1] "https://github.com/SwissClinicalTrialOrganisation/validation_platform/issues/141"
#> 
#> [[1]]$id
#> [1] 3077027886
#> 
#> [[1]]$node_id
#> [1] "I_kwDOKHVskc63Z7gu"
#> 
#> [[1]]$number
#> [1] 141
#> 
#> [[1]]$title
#> [1] "[Package risk assessment]: forcats version 1.0.0"
#> 
#> [[1]]$user
#> [[1]]$user$login
#> [1] "DrEspresso"
#> 
#> [[1]]$user$id
#> [1] 45166575
#> 
#> [[1]]$user$node_id
#> [1] "MDQ6VXNlcjQ1MTY2NTc1"
#> 
#> [[1]]$user$avatar_url
#> [1] "https://avatars.githubusercontent.com/u/45166575?v=4"
#> 
#> [[1]]$user$gravatar_id
#> [1] ""
#> 
#> [[1]]$user$url
#> [1] "https://api.github.com/users/DrEspresso"
#> 
#> [[1]]$user$html_url
#> [1] "https://github.com/DrEspresso"
#> 
#> [[1]]$user$followers_url
#> [1] "https://api.github.com/users/DrEspresso/followers"
#> 
#> [[1]]$user$following_url
#> [1] "https://api.github.com/users/DrEspresso/following{/other_user}"
#> 
#> [[1]]$user$gists_url
#> [1] "https://api.github.com/users/DrEspresso/gists{/gist_id}"
#> 
#> [[1]]$user$starred_url
#> [1] "https://api.github.com/users/DrEspresso/starred{/owner}{/repo}"
#> 
#> [[1]]$user$subscriptions_url
#> [1] "https://api.github.com/users/DrEspresso/subscriptions"
#> 
#> [[1]]$user$organizations_url
#> [1] "https://api.github.com/users/DrEspresso/orgs"
#> 
#> [[1]]$user$repos_url
#> [1] "https://api.github.com/users/DrEspresso/repos"
#> 
#> [[1]]$user$events_url
#> [1] "https://api.github.com/users/DrEspresso/events{/privacy}"
#> 
#> [[1]]$user$received_events_url
#> [1] "https://api.github.com/users/DrEspresso/received_events"
#> 
#> [[1]]$user$type
#> [1] "User"
#> 
#> [[1]]$user$user_view_type
#> [1] "public"
#> 
#> [[1]]$user$site_admin
#> [1] FALSE
#> 
#> 
#> [[1]]$labels
#> [[1]]$labels[[1]]
#> [[1]]$labels[[1]]$id
#> [1] 5847585136
#> 
#> [[1]]$labels[[1]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsRcA"
#> 
#> [[1]]$labels[[1]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/labels/package"
#> 
#> [[1]]$labels[[1]]$name
#> [1] "package"
#> 
#> [[1]]$labels[[1]]$color
#> [1] "3A0FE0"
#> 
#> [[1]]$labels[[1]]$default
#> [1] FALSE
#> 
#> [[1]]$labels[[1]]$description
#> [1] ""
#> 
#> 
#> [[1]]$labels[[2]]
#> [[1]]$labels[[2]]$id
#> [1] 5847585907
#> 
#> [[1]]$labels[[2]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsUcw"
#> 
#> [[1]]$labels[[2]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/labels/:sparkles:%20approved%20:sparkles:"
#> 
#> [[1]]$labels[[2]]$name
#> [1] ":sparkles: approved :sparkles:"
#> 
#> [[1]]$labels[[2]]$color
#> [1] "befc03"
#> 
#> [[1]]$labels[[2]]$default
#> [1] FALSE
#> 
#> [[1]]$labels[[2]]$description
#> [1] ""
#> 
#> 
#> [[1]]$labels[[3]]
#> [[1]]$labels[[3]]$id
#> [1] 6781639450
#> 
#> [[1]]$labels[[3]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABlDebGg"
#> 
#> [[1]]$labels[[3]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/labels/Low%20risk"
#> 
#> [[1]]$labels[[3]]$name
#> [1] "Low risk"
#> 
#> [[1]]$labels[[3]]$color
#> [1] "0e8a16"
#> 
#> [[1]]$labels[[3]]$default
#> [1] FALSE
#> 
#> [[1]]$labels[[3]]$description
#> [1] "This package is low risk"
#> 
#> 
#> 
#> [[1]]$state
#> [1] "closed"
#> 
#> [[1]]$locked
#> [1] FALSE
#> 
#> [[1]]$assignee
#> NULL
#> 
#> [[1]]$assignees
#> list()
#> 
#> [[1]]$milestone
#> NULL
#> 
#> [[1]]$comments
#> [1] 1
#> 
#> [[1]]$created_at
#> [1] "2025-05-20T13:25:57Z"
#> 
#> [[1]]$updated_at
#> [1] "2025-05-20T13:27:31Z"
#> 
#> [[1]]$closed_at
#> [1] "2025-05-20T13:27:30Z"
#> 
#> [[1]]$author_association
#> [1] "NONE"
#> 
#> [[1]]$type
#> NULL
#> 
#> [[1]]$active_lock_reason
#> NULL
#> 
#> [[1]]$sub_issues_summary
#> [[1]]$sub_issues_summary$total
#> [1] 0
#> 
#> [[1]]$sub_issues_summary$completed
#> [1] 0
#> 
#> [[1]]$sub_issues_summary$percent_completed
#> [1] 0
#> 
#> 
#> [[1]]$body
#> [1] "### Name\n\nConstantin Sluka\n\n### What is your relationship with the SCTO?\n\nOther SCTO platform\n\n### Name of the package you have validated\n\nforcats\n\n### Version number of the package evaluated\n\n1.0.0\n\n### Date of release of the evaluated version of the package\n\n2023-01-29\n\n### The package author has...\n\nWell-known or known credentials\n\n### Is there a maintainer listed for the package and are their contact details available?\n\nAvailable\n\n### Package purpose\n\nNon-statistical\n\n### Number of dependencies\n\n6\n\n### Is the package available from CRAN or bioconductor?\n\nYes\n\n### If not CRAN or bioconductor, where is the package available?\n\n_No response_\n\n### Is source code available, accessible and documented (i.e., well-structured and including comments) or is the source code unavailable or not clearly commented.\n\nYes\n\n### Number of downloads in the last 12 months\n\n7103732\n\n### Bug reporting address is available (in DESCRIPTION)\n\nYes\n\n### Does the package have one or more vignettes?\n\nYes\n\n### Does the package have unit and/or function tests performed by the authors? Are they comprehensive? Are they well documented?\n\nYes, comprehensive"
#> 
#> [[1]]$closed_by
#> [[1]]$closed_by$login
#> [1] "github-actions[bot]"
#> 
#> [[1]]$closed_by$id
#> [1] 41898282
#> 
#> [[1]]$closed_by$node_id
#> [1] "MDM6Qm90NDE4OTgyODI="
#> 
#> [[1]]$closed_by$avatar_url
#> [1] "https://avatars.githubusercontent.com/in/15368?v=4"
#> 
#> [[1]]$closed_by$gravatar_id
#> [1] ""
#> 
#> [[1]]$closed_by$url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D"
#> 
#> [[1]]$closed_by$html_url
#> [1] "https://github.com/apps/github-actions"
#> 
#> [[1]]$closed_by$followers_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/followers"
#> 
#> [[1]]$closed_by$following_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/following{/other_user}"
#> 
#> [[1]]$closed_by$gists_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/gists{/gist_id}"
#> 
#> [[1]]$closed_by$starred_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/starred{/owner}{/repo}"
#> 
#> [[1]]$closed_by$subscriptions_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/subscriptions"
#> 
#> [[1]]$closed_by$organizations_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/orgs"
#> 
#> [[1]]$closed_by$repos_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/repos"
#> 
#> [[1]]$closed_by$events_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/events{/privacy}"
#> 
#> [[1]]$closed_by$received_events_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/received_events"
#> 
#> [[1]]$closed_by$type
#> [1] "Bot"
#> 
#> [[1]]$closed_by$user_view_type
#> [1] "public"
#> 
#> [[1]]$closed_by$site_admin
#> [1] FALSE
#> 
#> 
#> [[1]]$reactions
#> [[1]]$reactions$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/141/reactions"
#> 
#> [[1]]$reactions$total_count
#> [1] 0
#> 
#> [[1]]$reactions$`+1`
#> [1] 0
#> 
#> [[1]]$reactions$`-1`
#> [1] 0
#> 
#> [[1]]$reactions$laugh
#> [1] 0
#> 
#> [[1]]$reactions$hooray
#> [1] 0
#> 
#> [[1]]$reactions$confused
#> [1] 0
#> 
#> [[1]]$reactions$heart
#> [1] 0
#> 
#> [[1]]$reactions$rocket
#> [1] 0
#> 
#> [[1]]$reactions$eyes
#> [1] 0
#> 
#> 
#> [[1]]$timeline_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/141/timeline"
#> 
#> [[1]]$performed_via_github_app
#> NULL
#> 
#> [[1]]$state_reason
#> [1] "completed"
#> 
#> 
#> [[2]]
#> [[2]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/140"
#> 
#> [[2]]$repository_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform"
#> 
#> [[2]]$labels_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/140/labels{/name}"
#> 
#> [[2]]$comments_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/140/comments"
#> 
#> [[2]]$events_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/140/events"
#> 
#> [[2]]$html_url
#> [1] "https://github.com/SwissClinicalTrialOrganisation/validation_platform/issues/140"
#> 
#> [[2]]$id
#> [1] 3077002658
#> 
#> [[2]]$node_id
#> [1] "I_kwDOKHVskc63Z1Wi"
#> 
#> [[2]]$number
#> [1] 140
#> 
#> [[2]]$title
#> [1] "[Package risk assessment]: roxygen2 version 7.3.2"
#> 
#> [[2]]$user
#> [[2]]$user$login
#> [1] "DrEspresso"
#> 
#> [[2]]$user$id
#> [1] 45166575
#> 
#> [[2]]$user$node_id
#> [1] "MDQ6VXNlcjQ1MTY2NTc1"
#> 
#> [[2]]$user$avatar_url
#> [1] "https://avatars.githubusercontent.com/u/45166575?v=4"
#> 
#> [[2]]$user$gravatar_id
#> [1] ""
#> 
#> [[2]]$user$url
#> [1] "https://api.github.com/users/DrEspresso"
#> 
#> [[2]]$user$html_url
#> [1] "https://github.com/DrEspresso"
#> 
#> [[2]]$user$followers_url
#> [1] "https://api.github.com/users/DrEspresso/followers"
#> 
#> [[2]]$user$following_url
#> [1] "https://api.github.com/users/DrEspresso/following{/other_user}"
#> 
#> [[2]]$user$gists_url
#> [1] "https://api.github.com/users/DrEspresso/gists{/gist_id}"
#> 
#> [[2]]$user$starred_url
#> [1] "https://api.github.com/users/DrEspresso/starred{/owner}{/repo}"
#> 
#> [[2]]$user$subscriptions_url
#> [1] "https://api.github.com/users/DrEspresso/subscriptions"
#> 
#> [[2]]$user$organizations_url
#> [1] "https://api.github.com/users/DrEspresso/orgs"
#> 
#> [[2]]$user$repos_url
#> [1] "https://api.github.com/users/DrEspresso/repos"
#> 
#> [[2]]$user$events_url
#> [1] "https://api.github.com/users/DrEspresso/events{/privacy}"
#> 
#> [[2]]$user$received_events_url
#> [1] "https://api.github.com/users/DrEspresso/received_events"
#> 
#> [[2]]$user$type
#> [1] "User"
#> 
#> [[2]]$user$user_view_type
#> [1] "public"
#> 
#> [[2]]$user$site_admin
#> [1] FALSE
#> 
#> 
#> [[2]]$labels
#> [[2]]$labels[[1]]
#> [[2]]$labels[[1]]$id
#> [1] 5847585136
#> 
#> [[2]]$labels[[1]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsRcA"
#> 
#> [[2]]$labels[[1]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/labels/package"
#> 
#> [[2]]$labels[[1]]$name
#> [1] "package"
#> 
#> [[2]]$labels[[1]]$color
#> [1] "3A0FE0"
#> 
#> [[2]]$labels[[1]]$default
#> [1] FALSE
#> 
#> [[2]]$labels[[1]]$description
#> [1] ""
#> 
#> 
#> [[2]]$labels[[2]]
#> [[2]]$labels[[2]]$id
#> [1] 5847585907
#> 
#> [[2]]$labels[[2]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABXIsUcw"
#> 
#> [[2]]$labels[[2]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/labels/:sparkles:%20approved%20:sparkles:"
#> 
#> [[2]]$labels[[2]]$name
#> [1] ":sparkles: approved :sparkles:"
#> 
#> [[2]]$labels[[2]]$color
#> [1] "befc03"
#> 
#> [[2]]$labels[[2]]$default
#> [1] FALSE
#> 
#> [[2]]$labels[[2]]$description
#> [1] ""
#> 
#> 
#> [[2]]$labels[[3]]
#> [[2]]$labels[[3]]$id
#> [1] 6781639450
#> 
#> [[2]]$labels[[3]]$node_id
#> [1] "LA_kwDOKHVskc8AAAABlDebGg"
#> 
#> [[2]]$labels[[3]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/labels/Low%20risk"
#> 
#> [[2]]$labels[[3]]$name
#> [1] "Low risk"
#> 
#> [[2]]$labels[[3]]$color
#> [1] "0e8a16"
#> 
#> [[2]]$labels[[3]]$default
#> [1] FALSE
#> 
#> [[2]]$labels[[3]]$description
#> [1] "This package is low risk"
#> 
#> 
#> 
#> [[2]]$state
#> [1] "closed"
#> 
#> [[2]]$locked
#> [1] FALSE
#> 
#> [[2]]$assignee
#> NULL
#> 
#> [[2]]$assignees
#> list()
#> 
#> [[2]]$milestone
#> NULL
#> 
#> [[2]]$comments
#> [1] 1
#> 
#> [[2]]$created_at
#> [1] "2025-05-20T13:17:45Z"
#> 
#> [[2]]$updated_at
#> [1] "2025-05-20T13:19:28Z"
#> 
#> [[2]]$closed_at
#> [1] "2025-05-20T13:19:28Z"
#> 
#> [[2]]$author_association
#> [1] "NONE"
#> 
#> [[2]]$type
#> NULL
#> 
#> [[2]]$active_lock_reason
#> NULL
#> 
#> [[2]]$sub_issues_summary
#> [[2]]$sub_issues_summary$total
#> [1] 0
#> 
#> [[2]]$sub_issues_summary$completed
#> [1] 0
#> 
#> [[2]]$sub_issues_summary$percent_completed
#> [1] 0
#> 
#> 
#> [[2]]$body
#> [1] "### Name\n\nConstantin Sluka\n\n### What is your relationship with the SCTO?\n\nOther SCTO platform\n\n### Name of the package you have validated\n\nroxygen2\n\n### Version number of the package evaluated\n\n7.3.2\n\n### Date of release of the evaluated version of the package\n\n2024-06-28\n\n### The package author has...\n\nWell-known or known credentials\n\n### Is there a maintainer listed for the package and are their contact details available?\n\nAvailable\n\n### Package purpose\n\nNon-statistical\n\n### Number of dependencies\n\n15\n\n### Is the package available from CRAN or bioconductor?\n\nYes\n\n### If not CRAN or bioconductor, where is the package available?\n\n_No response_\n\n### Is source code available, accessible and documented (i.e., well-structured and including comments) or is the source code unavailable or not clearly commented.\n\nYes\n\n### Number of downloads in the last 12 months\n\n2141229\n\n### Bug reporting address is available (in DESCRIPTION)\n\nYes\n\n### Does the package have one or more vignettes?\n\nYes\n\n### Does the package have unit and/or function tests performed by the authors? Are they comprehensive? Are they well documented?\n\nYes, comprehensive"
#> 
#> [[2]]$closed_by
#> [[2]]$closed_by$login
#> [1] "github-actions[bot]"
#> 
#> [[2]]$closed_by$id
#> [1] 41898282
#> 
#> [[2]]$closed_by$node_id
#> [1] "MDM6Qm90NDE4OTgyODI="
#> 
#> [[2]]$closed_by$avatar_url
#> [1] "https://avatars.githubusercontent.com/in/15368?v=4"
#> 
#> [[2]]$closed_by$gravatar_id
#> [1] ""
#> 
#> [[2]]$closed_by$url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D"
#> 
#> [[2]]$closed_by$html_url
#> [1] "https://github.com/apps/github-actions"
#> 
#> [[2]]$closed_by$followers_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/followers"
#> 
#> [[2]]$closed_by$following_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/following{/other_user}"
#> 
#> [[2]]$closed_by$gists_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/gists{/gist_id}"
#> 
#> [[2]]$closed_by$starred_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/starred{/owner}{/repo}"
#> 
#> [[2]]$closed_by$subscriptions_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/subscriptions"
#> 
#> [[2]]$closed_by$organizations_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/orgs"
#> 
#> [[2]]$closed_by$repos_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/repos"
#> 
#> [[2]]$closed_by$events_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/events{/privacy}"
#> 
#> [[2]]$closed_by$received_events_url
#> [1] "https://api.github.com/users/github-actions%5Bbot%5D/received_events"
#> 
#> [[2]]$closed_by$type
#> [1] "Bot"
#> 
#> [[2]]$closed_by$user_view_type
#> [1] "public"
#> 
#> [[2]]$closed_by$site_admin
#> [1] FALSE
#> 
#> 
#> [[2]]$reactions
#> [[2]]$reactions$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/140/reactions"
#> 
#> [[2]]$reactions$total_count
#> [1] 0
#> 
#> [[2]]$reactions$`+1`
#> [1] 0
#> 
#> [[2]]$reactions$`-1`
#> [1] 0
#> 
#> [[2]]$reactions$laugh
#> [1] 0
#> 
#> [[2]]$reactions$hooray
#> [1] 0
#> 
#> [[2]]$reactions$confused
#> [1] 0
#> 
#> [[2]]$reactions$heart
#> [1] 0
#> 
#> [[2]]$reactions$rocket
#> [1] 0
#> 
#> [[2]]$reactions$eyes
#> [1] 0
#> 
#> 
#> [[2]]$timeline_url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/140/timeline"
#> 
#> [[2]]$performed_via_github_app
#> NULL
#> 
#> [[2]]$state_reason
#> [1] "completed"
#> 
#> 
#> [[3]]
#> [[3]]$url
#> [1] "https://api.github.com/repos/SwissClinicalTrialOrganisation/validation_platform/issues/139"
#> 
#> [[3]]$repository_url
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